Give alcohol soaking a try.....
Hi John:
One of the secondary benefits of alcohol soaking is that it kills most things that are living in or on the wood - fungi included. Running your roughed-out blanks through an alcohol bath would result in killing most active fungal growth within the wood, as well as those fungi on the surface. In some cases, I think this is even more important than the intended purpose of aiding water loss and reducing drying times. Given the situation and turning style/times you describe, I would predict that soaking your roughed-out pieces in alcohol, and then storing them "loosely" in paper bags (which can he opened periodically), storing them in cardboard boxes (like John Jordan does) , or wrapping them in kraft paper/paper-bag material would be a viable method to use (or at least try) to eliminate the problem you describe. I tried the "surround in shavings" slow-drying method years ago, and after my first few 'scummy black bowl' results, that method was quickly abandoned. I now routinely run most of my wet rough-outs through an alcohol soak. Even if it helps by removing some water, it does provide a good method of reducing or eliminating mold growth on the wood. BTW - I also spin/blow out as much water as I can while the piece is still on the lathe.
I've only done a little wood bleaching (I didn't like doing it or the results!), and I doubt that you would be able to selectively bleach the areas stained with the mildew to make it look "normal". You can either chalk up these pieces as a total loss, or try some other form of surface embellishment to mask the stains. Perhaps woodburning a design or texture might help, or scorching the entire piece, and then sanding back to some "good" wood might produce an interesting result. "Extreme" methods of ebonizing, painting, or gilding would also mask the stains. Just like a bad catch, the mildew stains might be viewed as "another design opportunity"....
Good luck!
Rob Wallace